IL_9N2B_127

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_127 not in the Motif Atlas

Geometric match to IL_5J7L_386

Geometric discrepancy: 0.0486

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9N2B|1|23|G|1666
9N2B|1|23|G|1667
9N2B|1|23|A|1668
9N2B|1|23|A|1669
9N2B|1|23|C|1670
9N2B|1|23|U|1671
9N2B|1|23|A|1672
9N2B|1|23|G|1673
9N2B|1|23|G|1674
*
9N2B|1|23|C|1990
9N2B|1|23|U|1991
9N2B|1|23|G|1992
9N2B|1|23|U|1993
9N2B|1|23|C|1994

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LN

50S ribosomal protein L14