IL_9N2B_131

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_131 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.1787

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9N2B|1|23|U|1720
9N2B|1|23|G|1721
9N2B|1|23|A|1722
9N2B|1|23|G|1723
9N2B|1|23|G|1724
*
9N2B|1|23|U|1736
9N2B|1|23|G|1737
9N2B|1|23|G|1738
9N2B|1|23|A|1739
9N2B|1|23|G|1740

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains