IL_9N2B_138

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_138 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0712

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9N2B|1|23|U|1851
9N2B|1|23|U|1852
9N2B|1|23|A|1853
9N2B|1|23|A|1854
9N2B|1|23|U|1855
9N2B|1|23|U|1856
9N2B|1|23|G|1857
9N2B|1|23|A|1858
9N2B|1|23|U|1859
9N2B|1|23|G|1860
*
9N2B|1|23|U|1882
9N2B|1|23|U|1883
9N2B|1|23|G|1884
9N2B|1|23|A|1885
9N2B|1|23|U|1886
9N2B|1|23|C|1887
9N2B|1|23|G|1888
9N2B|1|23|A|1889
9N2B|1|23|A|1890
9N2B|1|23|G|1891

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains