IL_9N2B_158

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9N2B|1|23|G|2576, 9N2B|1|23|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_158 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.0784

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9N2B|1|23|C|2510
9N2B|1|23|U|2511
9N2B|1|23|C|2512
*
9N2B|1|23|G|2574
9N2B|1|23|C|2575
9N2B|1|23|G|2576
9N2B|1|23|A|2577
9N2B|1|23|G|2578

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LC

50S ribosomal protein L3

Chain Lf

50S ribosomal protein L32