IL_9N2B_163

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_163 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.0787

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9N2B|1|23|C|2652
9N2B|1|23|U|2653
9N2B|1|23|A|2654
9N2B|1|23|G|2655
9N2B|1|23|U|2656
9N2B|1|23|A|2657
9N2B|1|23|C|2658
*
9N2B|1|23|G|2663
9N2B|1|23|G|2664
9N2B|1|23|A|2665
9N2B|1|23|C|2666
9N2B|1|23|C|2667
9N2B|1|23|G|2668

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LF

50S ribosomal protein L6