IL_9N2B_167

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

9N2B|1|23|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_167 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0573

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9N2B|1|23|G|2737
9N2B|1|23|A|2738
9N2B|1|23|U|2739
9N2B|1|23|A|2740
9N2B|1|23|A|2741
9N2B|1|23|G|2742
*
9N2B|1|23|C|2762
9N2B|1|23|G|2763
9N2B|1|23|A|2764
9N2B|1|23|A|2765
9N2B|1|23|A|2766
9N2B|1|23|C|2767

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LF

50S ribosomal protein L6

Chain LM

50S ribosomal protein L13

Chain Lj

50S ribosomal protein L36