IL_9N2C_025

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

9N2C|1|16|A|532, 9N2C|1|16|U|534, 9N2C|1|16|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2C_025 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.1742

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9N2C|1|16|G|515
9N2C|1|16|PSU|516
9N2C|1|16|G|517
9N2C|1|16|C|518
9N2C|1|16|C|519
9N2C|1|16|A|520
9N2C|1|16|G|521
*
9N2C|1|16|C|528
9N2C|1|16|G|529
9N2C|1|16|G|530
9N2C|1|16|U|531
9N2C|1|16|A|532
9N2C|1|16|A|533
9N2C|1|16|U|534
9N2C|1|16|A|535
9N2C|1|16|C|536

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnH operon

Nearby chains

Chain SC

30S ribosomal protein S3

Chain SD

30S ribosomal protein S4

Chain SL

Small ribosomal subunit protein uS12