IL_9N2C_034
3D structure
- PDB id
- 9N2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AGAAU*GGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N2C_034 not in the Motif Atlas
- Homologous match to IL_5J7L_361
- Geometric discrepancy: 0.0736
- The information below is about IL_5J7L_361
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
9N2C|1|16|A|673
9N2C|1|16|G|674
9N2C|1|16|A|675
9N2C|1|16|A|676
9N2C|1|16|U|677
*
9N2C|1|16|G|713
9N2C|1|16|G|714
9N2C|1|16|A|715
9N2C|1|16|A|716
9N2C|1|16|U|717
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnH operon
Nearby chains
- Chain LB
- 50S ribosomal protein L2
- Chain SF
- 30S ribosomal protein S6
- Chain SK
- Small ribosomal subunit protein uS11
- Chain SR
- 30S ribosomal protein S18
- Chain SU
- 30S ribosomal protein S21
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