IL_9N2C_038

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2C_038 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0662

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

9N2C|1|16|G|887
9N2C|1|16|G|888
9N2C|1|16|A|889
9N2C|1|16|G|890
9N2C|1|16|U|891
9N2C|1|16|A|892
9N2C|1|16|C|893
9N2C|1|16|G|894
*
9N2C|1|16|U|905
9N2C|1|16|A|906
9N2C|1|16|A|907
9N2C|1|16|A|908
9N2C|1|16|A|909
9N2C|1|16|C|910

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnH operon

Nearby chains

Chain SL

Small ribosomal subunit protein uS12