IL_9N2C_048

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

9N2C|1|16|C|1200, 9N2C|1|16|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2C_048 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.0729

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9N2C|1|16|G|1057
9N2C|1|16|G|1058
*
9N2C|1|16|U|1199
9N2C|1|16|C|1200
9N2C|1|16|A|1201
9N2C|1|16|U|1202
9N2C|1|16|C|1203

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnH operon

Nearby chains

Chain SC

30S ribosomal protein S3

Chain SJ

30S ribosomal protein S10

Chain SN

30S ribosomal protein S14