IL_9N2C_057

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2C_057 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0727

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9N2C|1|16|C|1303
9N2C|1|16|G|1304
9N2C|1|16|G|1305
9N2C|1|16|A|1306
9N2C|1|16|U|1307
9N2C|1|16|U|1308
*
9N2C|1|16|A|1329
9N2C|1|16|U|1330
9N2C|1|16|G|1331
9N2C|1|16|A|1332
9N2C|1|16|A|1333
9N2C|1|16|G|1334

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnH operon

Nearby chains

Chain SM

30S ribosomal protein S13