IL_9N2C_058

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9N2C|1|16|C|1400, 9N2C|1|16|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2C_058 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.0796

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

9N2C|1|16|C|1399
9N2C|1|16|C|1400
9N2C|1|16|G|1401
*
9N2C|1|16|C|1501
9N2C|1|16|A|1502
9N2C|1|16|A|1503
9N2C|1|16|G|1504

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnH operon

Nearby chains

Chain Pt

Transfer RNA; tRNA

Chain mR

Synthetic messenger RNA (mRNA) 60 bp in length