IL_9N2C_083

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9N2C|1|23|G|801, 9N2C|1|23|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2C_083 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.059

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9N2C|1|23|G|674
9N2C|1|23|A|675
9N2C|1|23|A|676
9N2C|1|23|A|677
9N2C|1|23|C|678
*
9N2C|1|23|G|799
9N2C|1|23|A|800
9N2C|1|23|G|801
9N2C|1|23|A|802
9N2C|1|23|U|803
9N2C|1|23|A|804
9N2C|1|23|G|805
9N2C|1|23|C|806

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LD

Large ribosomal subunit protein uL4

Chain LO

50S ribosomal protein L15