IL_9N2C_093
3D structure
- PDB id
- 9N2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N2C_093 not in the Motif Atlas
- Homologous match to IL_5J7L_270
- Geometric discrepancy: 0.0546
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9N2C|1|23|G|856
9N2C|1|23|G|857
9N2C|1|23|G|858
9N2C|1|23|G|859
9N2C|1|23|U|860
9N2C|1|23|A|861
9N2C|1|23|G|862
*
9N2C|1|23|C|915
9N2C|1|23|G|916
9N2C|1|23|A|917
9N2C|1|23|A|918
9N2C|1|23|U|919
9N2C|1|23|A|920
9N2C|1|23|C|921
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain LP
- 50S ribosomal protein L16
- Chain La
- 50S ribosomal protein L27
- Chain Ld
- Large ribosomal subunit protein uL30
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