IL_9N2C_107
3D structure
- PDB id
- 9N2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 9N2C|1|23|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N2C_107 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.1995
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9N2C|1|23|C|1043
9N2C|1|23|C|1044
9N2C|1|23|C|1045
9N2C|1|23|A|1046
9N2C|1|23|G|1047
9N2C|1|23|A|1048
9N2C|1|23|C|1049
9N2C|1|23|A|1050
9N2C|1|23|G|1051
*
9N2C|1|23|U|1108
9N2C|1|23|C|1109
9N2C|1|23|G|1110
9N2C|1|23|A|1111
9N2C|1|23|G|1112
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LF
- 50S ribosomal protein L6
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