IL_9N2C_125

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2C_125 not in the Motif Atlas

Homologous match to IL_5J7L_303

Geometric discrepancy: 0.0888

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9N2C|1|23|C|1526
9N2C|1|23|G|1527
9N2C|1|23|A|1528
9N2C|1|23|G|1529
*
9N2C|1|23|U|1542
9N2C|1|23|G|1543
9N2C|1|23|A|1544
9N2C|1|23|A|1545
9N2C|1|23|G|1546

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains