IL_9N2C_178
3D structure
- PDB id
- 9N2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- 9N2C|1|5|C|35
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N2C_178 not in the Motif Atlas
- Homologous match to IL_5J7L_358
- Geometric discrepancy: 0.1947
- The information below is about IL_5J7L_358
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.11
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
9N2C|1|5|A|34
9N2C|1|5|C|35
9N2C|1|5|C|36
9N2C|1|5|C|37
9N2C|1|5|C|38
*
9N2C|1|5|G|44
9N2C|1|5|A|45
9N2C|1|5|A|46
9N2C|1|5|C|47
9N2C|1|5|U|48
Current chains
- Chain 5
- 5S large subunit ribosomal RNA of the H operon
Nearby chains
- Chain 23
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- 50S ribosomal protein L5
- Chain LR
- 50S ribosomal protein L18
- Chain Le
- 50S ribosomal protein L31
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