IL_9N2C_179
3D structure
- PDB id
- 9N2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N2C_179 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0528
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9N2C|1|5|C|71
9N2C|1|5|G|72
9N2C|1|5|A|73
9N2C|1|5|U|74
9N2C|1|5|G|75
9N2C|1|5|G|76
9N2C|1|5|U|77
9N2C|1|5|A|78
9N2C|1|5|G|79
*
9N2C|1|5|C|97
9N2C|1|5|G|98
9N2C|1|5|A|99
9N2C|1|5|G|100
9N2C|1|5|A|101
9N2C|1|5|G|102
9N2C|1|5|U|103
9N2C|1|5|A|104
9N2C|1|5|G|105
Current chains
- Chain 5
- 5S large subunit ribosomal RNA of the H operon
Nearby chains
- Chain 23
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- 50S ribosomal protein L16
- Chain LY
- 50S ribosomal protein L25
- Chain Ld
- Large ribosomal subunit protein uL30
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