IL_9N3I_012

3D structure

PDB id

9N3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vibrio cholerae Glycine Riboswitch - glycine bound at 2.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GCAAG*UGAAAC

Length

11 nucleotides

Bulged bases

9N3I|1|A|A|206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N3I_012 not in the Motif Atlas

Homologous match to IL_3OXE_004

Geometric discrepancy: 0.0961

The information below is about IL_3OXE_004

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

UAA/GAN with extra stack

Motif group

IL_78154.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

9N3I|1|A|G|179
9N3I|1|A|C|180
9N3I|1|A|A|181
9N3I|1|A|A|182
9N3I|1|A|G|183
*
9N3I|1|A|U|202
9N3I|1|A|G|203
9N3I|1|A|A|204
9N3I|1|A|A|205
9N3I|1|A|A|206
9N3I|1|A|C|207

Current chains

Chain A

Glycine Riboswitch

Nearby chains