IL_9N6W_005

3D structure

PDB id

9N6W (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State A*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUCG*UC

Length

6 nucleotides

Bulged bases

9N6W|1|L0|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N6W_005 not in the Motif Atlas

Geometric match to IL_8DP3_001

Geometric discrepancy: 0.2812

The information below is about IL_8DP3_001

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9N6W|1|L0|G|107
9N6W|1|L0|U|108
9N6W|1|L0|C|109
9N6W|1|L0|G|110
*
9N6W|1|L0|U|136
9N6W|1|L0|C|137

Current chains

Chain L0

5'ETS rRNA

Nearby chains

Chain LL

U3 small nucleolar RNA-associated protein 5

Chain SU

Nucleolar complex protein 4