IL_9N6W_054

3D structure

PDB id

9N6W (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State A*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UACA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N6W_054 not in the Motif Atlas

Geometric match to IL_8GLP_220

Geometric discrepancy: 0.2512

The information below is about IL_8GLP_220

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9N6W|1|L1|U|517
9N6W|1|L1|A|518
9N6W|1|L1|C|519
9N6W|1|L1|A|520
*
9N6W|1|L1|U|532
9N6W|1|L1|U|533
9N6W|1|L1|A|534
9N6W|1|L1|A|535

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L9

40S ribosomal protein S9-A

Chain LF

40S ribosomal protein S24-A

Chain NC

U3 small nucleolar ribonucleoprotein protein LCP5

Chain SI

Ribosome biogenesis protein BMS1