IL_9N6W_082

3D structure

PDB id

9N6W (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State A*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N6W_082 not in the Motif Atlas

Homologous match to IL_9PN5_229

Geometric discrepancy: 0.2785

The information below is about IL_9PN5_229

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9N6W|1|L1|G|1672
9N6W|1|L1|G|1673
9N6W|1|L1|C|1674
*
9N6W|1|L1|G|1727
9N6W|1|L1|A|1728
9N6W|1|L1|C|1729

Current chains

Chain L1

18S rRNA

Nearby chains