IL_9N6W_083

3D structure

PDB id

9N6W (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State A*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUCA*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N6W_083 not in the Motif Atlas

Homologous match to IL_9PN5_230

Geometric discrepancy: 0.2134

The information below is about IL_9PN5_230

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9N6W|1|L1|C|1675
9N6W|1|L1|U|1676
9N6W|1|L1|C|1677
9N6W|1|L1|A|1678
*
9N6W|1|L1|U|1723
9N6W|1|L1|U|1724
9N6W|1|L1|U|1725
9N6W|1|L1|G|1726

Current chains

Chain L1

18S rRNA

Nearby chains