IL_9N6X_011

3D structure

PDB id

9N6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.71 Å

Loop

Sequence

CG*UUG

Length

5 nucleotides

Bulged bases

9N6X|1|L0|U|267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N6X_011 not in the Motif Atlas

Geometric match to IL_4O26_001

Geometric discrepancy: 0.2946

The information below is about IL_4O26_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9N6X|1|L0|C|245
9N6X|1|L0|G|246
*
9N6X|1|L0|U|266
9N6X|1|L0|U|267
9N6X|1|L0|G|268

Current chains

Chain L0

5'ETS rRNA

Nearby chains

Chain LC

40S ribosomal protein S16-A

Chain SI

Ribosome biogenesis protein BMS1

Chain SY

U3 small nucleolar RNA-associated protein 11