IL_9N6Y_008

3D structure

PDB id

9N6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

AUUG*UUU

Length

7 nucleotides

Bulged bases

9N6Y|1|L0|U|176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N6Y_008 not in the Motif Atlas

Geometric match to IL_2O3V_004

Geometric discrepancy: 0.2241

The information below is about IL_2O3V_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

9N6Y|1|L0|A|175
9N6Y|1|L0|U|176
9N6Y|1|L0|U|177
9N6Y|1|L0|G|178
*
9N6Y|1|L0|U|219
9N6Y|1|L0|U|220
9N6Y|1|L0|U|221

Current chains

Chain L0

5'ETS rRNA

Nearby chains

Chain ND

Bud site selection protein 21