IL_9N6Y_086

3D structure

PDB id

9N6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

9N6Y|1|L1|G|1680

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N6Y_086 not in the Motif Atlas

Geometric match to IL_7A0S_070

Geometric discrepancy: 0.3876

The information below is about IL_7A0S_070

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9N6Y|1|L1|A|1678
9N6Y|1|L1|G|1679
9N6Y|1|L1|G|1680
9N6Y|1|L1|A|1681
9N6Y|1|L1|U|1682
*
9N6Y|1|L1|A|1719
9N6Y|1|L1|G|1720
9N6Y|1|L1|A|1721
9N6Y|1|L1|A|1722
9N6Y|1|L1|U|1723

Current chains

Chain L1

18S rRNA

Nearby chains