IL_9N6Z_057

3D structure

PDB id

9N6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State D

Experimental method

ELECTRON MICROSCOPY

Resolution

4.74 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

9N6Z|1|L1|U|1657

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N6Z_057 not in the Motif Atlas

Homologous match to IL_9H3G_239

Geometric discrepancy: 0.5335

The information below is about IL_9H3G_239

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9N6Z|1|L1|U|1656
9N6Z|1|L1|U|1657
9N6Z|1|L1|G|1658
*
9N6Z|1|L1|U|1743
9N6Z|1|L1|A|1744

Current chains

Chain L1

18S rRNA

Nearby chains

Chain LQ

U3 small nucleolar RNA-associated protein 12

Chain LR

U3 small nucleolar RNA-associated protein 13

Chain NA

U3 small nucleolar RNA-associated protein MPP10