IL_9N70_019

3D structure

PDB id

9N70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State E

Experimental method

ELECTRON MICROSCOPY

Resolution

5.17 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

9N70|1|L1|U|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N70_019 not in the Motif Atlas

Homologous match to IL_9PN5_158

Geometric discrepancy: 0.3283

The information below is about IL_9PN5_158

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9N70|1|L1|C|275
9N70|1|L1|C|276
*
9N70|1|L1|G|279
9N70|1|L1|U|280
9N70|1|L1|G|281

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L6

40S ribosomal protein S6-A