IL_9N70_032

3D structure

PDB id

9N70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State E

Experimental method

ELECTRON MICROSCOPY

Resolution

5.17 Å

Loop

Sequence

GGCAAGUC*GCAGCCGCGGUAAUUCC

Length

25 nucleotides

Bulged bases

9N70|1|L1|A|556, 9N70|1|L1|C|572, 9N70|1|L1|C|573, 9N70|1|L1|G|574, 9N70|1|L1|A|579

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N70|1|L1|G|552
9N70|1|L1|G|553
9N70|1|L1|C|554
9N70|1|L1|A|555
9N70|1|L1|A|556
9N70|1|L1|G|557
9N70|1|L1|U|558
9N70|1|L1|C|559
*
9N70|1|L1|G|568
9N70|1|L1|C|569
9N70|1|L1|A|570
9N70|1|L1|G|571
9N70|1|L1|C|572
9N70|1|L1|C|573
9N70|1|L1|G|574
9N70|1|L1|C|575
9N70|1|L1|G|576
9N70|1|L1|G|577
9N70|1|L1|U|578
9N70|1|L1|A|579
9N70|1|L1|A|580
9N70|1|L1|U|581
9N70|1|L1|U|582
9N70|1|L1|C|583
9N70|1|L1|C|584

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NA

U3 small nucleolar RNA-associated protein MPP10

Chain NB

Something about silencing protein 10

Chain SI

Ribosome biogenesis protein BMS1

Chain SR

40S ribosomal protein S23-A

Chain SY

U3 small nucleolar RNA-associated protein 11