3D structure

PDB id
9N74 (explore in PDB, NAKB, or RNA 3D Hub)
Description
SSU processome maturation and disassembly, State H
Experimental method
ELECTRON MICROSCOPY
Resolution
2.65 Å

Loop

Sequence
GAG*CGAGG(A2M)AC
Length
11 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9N74_027 not in the Motif Atlas
Homologous match to IL_9PN5_168
Geometric discrepancy: 0.1306
The information below is about IL_9PN5_168
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_02511.3
Basepair signature
cWW-tSH-L-cWW-L-L-R-L
Number of instances in this motif group
4

Unit IDs

9N74|1|L1|G|514
9N74|1|L1|A|515
9N74|1|L1|G|516
*
9N74|1|L1|C|536
9N74|1|L1|G|537
9N74|1|L1|A|538
9N74|1|L1|G|539
9N74|1|L1|G|540
9N74|1|L1|A2M|541
9N74|1|L1|A|542
9N74|1|L1|C|543

Current chains

Chain L1
18S rRNA

Nearby chains

Chain L9
40S ribosomal protein S9-A
Chain NB
Something about silencing protein 10
Chain SI
Ribosome biogenesis protein BMS1

Coloring options:


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