IL_9N74_035

3D structure

PDB id

9N74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N74_035 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1482

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9N74|1|L1|G|703
9N74|1|L1|C|704
9N74|1|L1|U|705
*
9N74|1|L1|A|733
9N74|1|L1|A|734
9N74|1|L1|C|735

Current chains

Chain L1

18S rRNA

Nearby chains

Chain LD

40S ribosomal protein S11-A