IL_9N79_003

3D structure

PDB id

9N79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State M

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N79_003 not in the Motif Atlas

Homologous match to IL_9PN5_146

Geometric discrepancy: 0.1133

The information below is about IL_9PN5_146

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_26092.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9N79|1|L1|C|50
9N79|1|L1|A|51
9N79|1|L1|U|52
*
9N79|1|L1|A|428
9N79|1|L1|G|429

Current chains

Chain L1

18S rRNA

Nearby chains

Chain SI

Ribosome biogenesis protein BMS1