IL_9N79_017

3D structure

PDB id

9N79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State M

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

9N79|1|L1|U|313, 9N79|1|L1|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N79_017 not in the Motif Atlas

Homologous match to IL_9PN5_159

Geometric discrepancy: 0.1904

The information below is about IL_9PN5_159

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.7

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

8

Unit IDs

9N79|1|L1|U|311
9N79|1|L1|A|312
9N79|1|L1|U|313
9N79|1|L1|C|314
9N79|1|L1|A|315
9N79|1|L1|A|316
*
9N79|1|L1|U|348
9N79|1|L1|U|349
9N79|1|L1|U|350
9N79|1|L1|C|351
9N79|1|L1|A|352
9N79|1|L1|A|353
9N79|1|L1|C|354
9N79|1|L1|G|355

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L8

40S ribosomal protein S8-A

Chain LD

40S ribosomal protein S11-A

Chain NS

Probable ATP-dependent RNA helicase DHR1

Chain SI

Ribosome biogenesis protein BMS1

Chain SR

40S ribosomal protein S23-A