IL_9N79_028

3D structure

PDB id

9N79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State M

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

ACA*UU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N79_028 not in the Motif Atlas

Homologous match to IL_9H3G_184

Geometric discrepancy: 0.0964

The information below is about IL_9H3G_184

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_26092.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9N79|1|L1|A|518
9N79|1|L1|C|519
9N79|1|L1|A|520
*
9N79|1|L1|U|532
9N79|1|L1|U|533

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L9

40S ribosomal protein S9-A

Chain LF

40S ribosomal protein S24-A

Chain SI

Ribosome biogenesis protein BMS1