IL_9N79_048
3D structure
- PDB id
- 9N79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SSU processome maturation and disassembly, State M
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.93 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N79_048 not in the Motif Atlas
- Homologous match to IL_9PN5_192
- Geometric discrepancy: 0.1044
- The information below is about IL_9PN5_192
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 42
Unit IDs
9N79|1|L1|G|1041
9N79|1|L1|G|1042
9N79|1|L1|A|1043
9N79|1|L1|U|1044
*
9N79|1|L1|G|1074
9N79|1|L1|C|1075
9N79|1|L1|A|1076
9N79|1|L1|C|1077
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain NF
- 40S ribosomal protein S13
- Chain NM
- Small ribosomal subunit protein eS1A
- Chain NS
- Probable ATP-dependent RNA helicase DHR1
- Chain SS
- U3 small nucleolar RNA-associated protein 14
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