IL_9N79_060

3D structure

PDB id

9N79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State M

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N79_060 not in the Motif Atlas

Homologous match to IL_9PN5_219

Geometric discrepancy: 0.1265

The information below is about IL_9PN5_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28265.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9N79|1|L1|G|1540
9N79|1|L1|G|1541
9N79|1|L1|G|1542
9N79|1|L1|A|1543
9N79|1|L1|U|1544
9N79|1|L1|A|1545
*
9N79|1|L1|U|1566
9N79|1|L1|U|1567
9N79|1|L1|C|1568
9N79|1|L1|A|1569
9N79|1|L1|A|1570
9N79|1|L1|C|1571

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L3

40S ribosomal protein S18-A

Chain NP

40S ribosomal protein S19-A

Chain SK

Ribosomal RNA small subunit methyltransferase NEP1

Chain ST

Nucleolar complex protein 14