Motif IL_28265.2 Version IL_28265.2 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9SUM_024 | 9SUM | 0.2407 | 0 | A | LSU rRNA | C | 711 | G | 712 | G | 713 | A | 714 | C | 715 | G | 716 | * | C | 701 | A | 702 | G | 703 | A | 704 | A | 705 | G | 706 | cWW | tSH | ntSH | tHS | cWWa | cWW |
| 2 | IL_8OI5_028 | 8OI5 | 0.2070 | 0 | 1 | LSU rRNA | C | 764 | G | 765 | G | 766 | A | 767 | U | 768 | G | 769 | * | C | 754 | U | 755 | G | 756 | A | 757 | U | 758 | G | 759 | cWW | tSH | ntSH | tHS | cWw | cWW |
| 3 | IL_9PN5_025 | 9PN5 | 0.1859 | 0 | A1 | LSU rRNA | C | 768 | G | 769 | G | 770 | A | 771 | U | 772 | G | 773 | * | C | 758 | U | 759 | G | 760 | A | 761 | U | 762 | G | 763 | cWW | tSH | tSH | tHS | cWw | cWW |
| 4 | IL_8CRE_465 | 8CRE | 0.0960 | 0 | CM | SSU rRNA | G | 1527 | G | 1528 | G | 1529 | A | 1530 | U | 1531 | A | 1532 | * | U | 1553 | U | 1554 | C | 1555 | A | 1556 | A | 1557 | C | 1558 | cWW | tSH | ntSH | cWw | cWW | |
| 5 | IL_9SUM_215 | 9SUM | 0.0583 | 0 | CA | SSU rRNA | G | 1515 | G | 1516 | G | 1517 | A | 1518 | U | 1519 | A | 1520 | * | U | 1541 | U | 1542 | C | 1543 | A | 1544 | A | 1545 | C | 1546 | cWW | tSH | tSH | cWw | cWW | |
| 6 | IL_9PN5_219 | 9PN5 | 0.0000 | 0 | B5 | SSU rRNA | G | 1540 | G | 1541 | G | 1542 | A | 1543 | U | 1544 | A | 1545 | * | U | 1566 | U | 1567 | C | 1568 | A | 1569 | A | 1570 | C | 1571 | cWW | tSH | tSH | cWw | cWW | |
| 7 | IL_9H3G_232 | 9H3G | 0.0448 | 0 | h1 | SSU rRNA | G | 1542 | G | 1543 | G | 1544 | A | 1545 | U | 1546 | A | 1547 | * | U | 1568 | U | 1569 | C | 1570 | A | 1571 | A | 1572 | C | 1573 | cWW | tSH | tSH | cWw | cWW | |
| 8 | IL_8B0X_056 | 8B0X | 0.1089 | 0 | A | SSU rRNA | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | * | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | cWW | tSH | tSH | tHS | cWw | cWW |
| 9 | IL_4LFB_055 | 4LFB | 0.1204 | 0 | A | SSU rRNA | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | * | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | cWW | tSH | ntSH | ntHS | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAUA*UUCAAC | 4 |
| CGGAUG*CUGAUG | 2 |
| CGGAUU*AUGAAG | 2 |
| CGGACG*CAGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAU*UCAA | 4 |
| GGAU*UGAU | 2 |
| GGAU*UGAA | 2 |
| GGAC*AGAA | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Heat map statistics
- Min 0.04 | Avg 0.15 | Max 0.29
Coloring options: