IL_9N7A_043

3D structure

PDB id

9N7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State N

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N7A_043 not in the Motif Atlas

Homologous match to IL_9PN5_186

Geometric discrepancy: 0.1168

The information below is about IL_9PN5_186

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9N7A|1|L1|G|885
9N7A|1|L1|U|886
9N7A|1|L1|A|887
9N7A|1|L1|U|888
*
9N7A|1|L1|A|924
9N7A|1|L1|G|925
9N7A|1|L1|A|926
9N7A|1|L1|C|927

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NG

40S ribosomal protein S14-A

Chain NM

Small ribosomal subunit protein eS1A