IL_9N9J_031

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

9N9J|1|L5|A|932, 9N9J|1|L5|G|933, 9N9J|1|L5|C|934, 9N9J|1|L5|A|935, 9N9J|1|L5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N9J|1|L5|A|732
9N9J|1|L5|A|733
9N9J|1|L5|G|734
9N9J|1|L5|G|735
*
9N9J|1|L5|C|928
9N9J|1|L5|A|929
9N9J|1|L5|G|930
9N9J|1|L5|C|931
9N9J|1|L5|A|932
9N9J|1|L5|G|933
9N9J|1|L5|C|934
9N9J|1|L5|A|935
9N9J|1|L5|C|936
9N9J|1|L5|U|937

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LM

Large ribosomal subunit protein eL14

Chain LS

Large ribosomal subunit protein eL20