IL_9N9J_049

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

9N9J|1|L5|A|1650, 9N9J|1|L5|G|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N9J|1|L5|G|1522
9N9J|1|L5|A|1523
9N9J|1|L5|A|1524
9N9J|1|L5|A|1525
9N9J|1|L5|G|1526
*
9N9J|1|L5|C|1648
9N9J|1|L5|U|1649
9N9J|1|L5|A|1650
9N9J|1|L5|G|1651
9N9J|1|L5|U|1652
9N9J|1|L5|A|1653
9N9J|1|L5|G|1654
9N9J|1|L5|C|1655

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LL

Large ribosomal subunit protein eL13

Chain LN

Large ribosomal subunit protein eL15

Chain La

60S ribosomal protein L27a

Chain Lj

Large ribosomal subunit protein eL37