IL_9N9J_050

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

9N9J|1|L5|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N9J_050 not in the Motif Atlas

Homologous match to IL_9H3G_035

Geometric discrepancy: 0.1305

The information below is about IL_9H3G_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9N9J|1|L5|G|1545
9N9J|1|L5|C|1546
*
9N9J|1|L5|G|1612
9N9J|1|L5|A|1613
9N9J|1|L5|C|1614

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lg

Large ribosomal subunit protein eL34

Chain Lp

Large ribosomal subunit protein eL43