IL_9N9J_074

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9N9J|1|L5|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N9J_074 not in the Motif Atlas

Homologous match to IL_8GLP_081

Geometric discrepancy: 0.1204

The information below is about IL_8GLP_081

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9N9J|1|L5|G|1946
9N9J|1|L5|U|1947
9N9J|1|L5|G|1948
*
9N9J|1|L5|C|2035
9N9J|1|L5|C|2036

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LH

Large ribosomal subunit protein uL6

Chain LS

Large ribosomal subunit protein eL20

Chain Lm

Ubiquitin-60S ribosomal protein L40