IL_9N9J_081

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9N9J|1|L5|U|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N9J|1|L5|C|2302
9N9J|1|L5|C|2303
9N9J|1|L5|U|2304
9N9J|1|L5|U|2305
9N9J|1|L5|G|2306
9N9J|1|L5|A|2307
9N9J|1|L5|A|2308
9N9J|1|L5|G|2309
*
9N9J|1|L5|U|2329
9N9J|1|L5|G|2330
9N9J|1|L5|G|2331
9N9J|1|L5|A|2332
9N9J|1|L5|G|2333

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain A

Peptidyl-prolyl cis-trans isomerase FKBP11

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

Large ribosomal subunit protein uL4

Chain LY

Large ribosomal subunit protein uL24

Chain Le

Large ribosomal subunit protein eL32