IL_9N9J_083

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N9J_083 not in the Motif Atlas

Homologous match to IL_9H3G_064

Geometric discrepancy: 0.1016

The information below is about IL_9H3G_064

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9N9J|1|L5|G|2358
9N9J|1|L5|U|2359
9N9J|1|L5|A|2360
9N9J|1|L5|G|2361
9N9J|1|L5|U|2362
9N9J|1|L5|A|2363
9N9J|1|L5|G|2364
*
9N9J|1|L5|C|3858
9N9J|1|L5|G|3859
9N9J|1|L5|A|3860
9N9J|1|L5|A|3861
9N9J|1|L5|A|3862
9N9J|1|L5|C|3863

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LP

Large ribosomal subunit protein uL22