IL_9N9J_105

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGG*CG

Length

5 nucleotides

Bulged bases

9N9J|1|L5|G|2906

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N9J_105 not in the Motif Atlas

Geometric match to IL_3D0U_005

Geometric discrepancy: 0.3691

The information below is about IL_3D0U_005

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9N9J|1|L5|C|2905
9N9J|1|L5|G|2906
9N9J|1|L5|G|2907
*
9N9J|1|L5|C|3588
9N9J|1|L5|G|3589

Current chains

Chain L5

28S ribosomal RNA

Nearby chains