IL_9N9J_136

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

9N9J|1|L5|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N9J_136 not in the Motif Atlas

Homologous match to IL_8GLP_150

Geometric discrepancy: 0.1222

The information below is about IL_8GLP_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9N9J|1|L5|U|4468
9N9J|1|L5|U|4469
9N9J|1|L5|G|4470
*
9N9J|1|L5|C|4485
9N9J|1|L5|C|4486
9N9J|1|L5|A|4487
9N9J|1|L5|A|4488
9N9J|1|L5|G|4489

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6

Chain LO

Large ribosomal subunit protein uL13

Chain Lm

Ubiquitin-60S ribosomal protein L40