IL_9N9J_145

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N9J_145 not in the Motif Atlas

Homologous match to IL_8GLP_162

Geometric discrepancy: 0.0917

The information below is about IL_8GLP_162

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9N9J|1|L5|U|4638
9N9J|1|L5|G|4639
9N9J|1|L5|C|4640
*
9N9J|1|L5|G|4659
9N9J|1|L5|G|4660
9N9J|1|L5|G|4661

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LW

Large ribosomal subunit protein eL24

Chain Ld

Large ribosomal subunit protein eL31