IL_9N9J_165

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N9J_165 not in the Motif Atlas

Homologous match to IL_4V9F_103

Geometric discrepancy: 0.1168

The information below is about IL_4V9F_103

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

9N9J|1|L7|C|28
9N9J|1|L7|C|29
*
9N9J|1|L7|G|48
9N9J|1|L7|A|49
9N9J|1|L7|A|50
9N9J|1|L7|G|51

Current chains

Chain L7

5S ribosomal RNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LJ

Large ribosomal subunit protein uL5