IL_9NDP_007

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

9NDP|1|5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_007 not in the Motif Atlas

Geometric match to IL_8GLP_007

Geometric discrepancy: 0.1063

The information below is about IL_8GLP_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36175.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

9NDP|1|5|C|118
9NDP|1|5|G|119
9NDP|1|5|A|120
9NDP|1|5|A|121
*
9NDP|1|5|U|152
9NDP|1|5|G|153

Current chains

Chain 5

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15

Chain h

eL35