IL_9NDP_036

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

9NDP|1|5|A|932, 9NDP|1|5|A|935, 9NDP|1|5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|A|732
9NDP|1|5|A|733
9NDP|1|5|G|734
9NDP|1|5|G|735
*
9NDP|1|5|C|928
9NDP|1|5|A|929
9NDP|1|5|G|930
9NDP|1|5|C|931
9NDP|1|5|A|932
9NDP|1|5|G|933
9NDP|1|5|C|934
9NDP|1|5|A|935
9NDP|1|5|G|935|||A
9NDP|1|5|C|936
9NDP|1|5|U|937

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain M

60S ribosomal protein L14

Chain S

60S ribosomal protein L18a